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1

Closing the gap between rocks and clocks using total-evidence dating

Ronquist, Fredrik, Lartillot, Nicolas, Phillips, Matthew J.

Journal:

Philosophical Transactions Biological Sciences

Year:

2016

Language:

english

File:

PDF, 857 KB

english, 2016

2

Phylogenetic Methods in Biogeography

Ronquist, Fredrik, Sanmartín, Isabel

Journal:

Annual Review of Ecology Evolution and Systematics

Year:

2011

Language:

english

File:

PDF, 710 KB

english, 2011

3

Xenacoelomorpha is the sister group to Nephrozoa

Cannon, Johanna Taylor, Vellutini, Bruno Cossermelli, Smith, Julian, Ronquist, Fredrik, Jondelius, Ulf, Hejnol, Andreas

Journal:

Year:

2016

Language:

english

File:

PDF, 1.78 MB

english, 2016

4

Bayesian Phylogenetics and Its Influence on Insect Systematics

Ronquist, Fredrik, Deans, Andrew R.

Journal:

Annual Review of Entomology

Year:

2010

Language:

english

File:

PDF, 491 KB

english, 2010

5

The Shifting Roles of Dispersal and Vicariance in Biogeography

Robert M. Zink, Rachelle C. Blackwell-Rago and Fredrik Ronquist

Journal:

Proceedings Biological Sciences

Year:

2000

Language:

english

File:

PDF, 1.15 MB

english, 2000

6

Establishing arthropod community composition using metabarcoding: surprising inconsistencies between soil samples and preservative ethanol and homogenate from Malaise trap catches

Marquina, Daniel, Esparza‐Salas, Rodrigo, Roslin, Tomas, Ronquist, Fredrik

Journal:

Molecular Ecology Resources

Year:

2019

Language:

english

File:

PDF, 691 KB

english, 2019

7

New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods

Marquina, Daniel, Andersson, Anders F., Ronquist, Fredrik

Journal:

Molecular Ecology Resources

Year:

2018

Language:

english

File:

PDF, 630 KB

english, 2018

8

Total-Evidence Dating under the Fossilized Birth-Death Process

Zhang, Chi, Stadler, Tanja, Klopfstein, Seraina, Heath, Tracy A., Ronquist, Fredrik

Journal:

Systematic Biology

Year:

2015

Language:

english

File:

PDF, 3.66 MB

english, 2015

9

A Total-Evidence Approach to Dating with Fossils, Applied to the Early Radiation of the Hymenoptera

Fredrik Ronquist, Seraina Klopfstein, Lars Vilhelmsen, Susanne Schulmeister, Debra L. Murray and Alexandr P. Rasnitsyn

Journal:

Systematic Biology

Year:

2012

Language:

english

File:

PDF, 6.30 MB

english, 2012

10

Phylogenetic approaches in coevolution and biogeography

FREDRIK RONQUIST

Journal:

Zoologica Scripta

Year:

1997

Language:

english

File:

PDF, 1022 KB

english, 1997

11

Southern Hemisphere Biogeography Inferred by Event-Based Models: Plant versus Animal Patterns

Isabel Sanmartíin and Fredrik Ronquist

Journal:

Systematic Biology

Year:

2004

Language:

english

File:

PDF, 5.79 MB

english, 2004

12

A mixed relaxed clock model

Lartillot, Nicolas, Phillips, Matthew J., Ronquist, Fredrik

Journal:

Philosophical Transactions Biological Sciences

Year:

2016

Language:

english

File:

PDF, 1.13 MB

english, 2016

13

Statistical and Computational Challenges in Molecular Phylogenetics and Evolution || Bayesian Analysis of Amino Acid Substitution Models

John P. Huelsenbeck, Paul Joyce, Clemens Lakner and Fredrik Ronquist

Journal:

Philosophical Transactions Biological Sciences

Year:

2008

Language:

english

File:

PDF, 2.10 MB

english, 2008

14

THE CYNIPOID GENUS PARAMBLYNOTUS: REVISION, PHYLOGENY, AND HISTORICAL BIOGEOGRAPHY (HYMENOPTERA: LIOPTERIDAE)

LIU, ZHIWEI, RONQUIST, FREDRIK, NORDLANDER, GÖRAN

Journal:

Bulletin of the American Museum of Natural History

Year:

2007

Language:

english

File:

PDF, 28.90 MB

english, 2007

15

RECONSTRUCTING THE HISTORY OF HOST-PARASITE ASSOCIATIONS USING GENERALISED PARSIMONY

Fredrik Ronquist

Journal:

Year:

1995

Language:

english

File:

PDF, 887 KB

english, 1995

16

Bayesian Inference of Ancestral Host-parasite Interactions under a Phylogenetic Model of Host Repertoire Evolution

Braga, Mariana P, Landis, Michael J, Nylin, SÃ¶ren, Janz, Niklas, Ronquist, Fredrik

Journal:

Systematic Biology

Year:

2020

Language:

english

File:

PDF, 1.16 MB

english, 2020

17

Fast Fitch-Parsimony Algorithms for Large Data Sets

Fredrik Ronquist

Journal:

Year:

1998

Language:

english

File:

PDF, 306 KB

english, 1998

18

Inferring dispersal: a Bayesian approach to phylogeny-based island biogeography, with special reference to the Canary Islands

Isabel Sanmartín, Paul Van Der Mark, Fredrik Ronquist

Journal:

Journal of Biogeography

Year:

2008

Language:

english

File:

PDF, 472 KB

english, 2008

19

Bayesian Phylogenetic Analysis of Combined Data

NYLANDER, JOHAN, RONQUIST, FREDRIK, HUELSENBECK, JOHN, NIEVES-ALDREY, JOS�

Journal:

Systematic Biology

Year:

2004

Language:

english

File:

PDF, 663 KB

english, 2004

20

A non-stationary Markov model detects directional evolution in hymenopteran morphology

Klopfstein, Seraina, Vilhelmsen, Lars, Ronquist, Fredrik

Journal:

Systematic Biology

Year:

2015

Language:

english

File:

PDF, 2.82 MB

english, 2015

21

Phylogeny, Evolution and Classification of Gall Wasps: The Plot Thickens

Ronquist, Fredrik, Nieves-Aldrey, José-Luis, Buffington, Matthew L., Liu, Zhiwei, Liljeblad, Johan, Nylander, Johan A. A., López-Vaamonde, Carlos

Journal:

Year:

2015

Language:

english

File:

PDF, 20.89 MB

english, 2015

22

Revision of the neotropical Anacharitinae genus Acanthaegilips (Hym., Cynipoidea, Figitidae)

Ros-Farré, Palmira, Sporrong, Michael, Ronquist, Fredrik, Pujade-Villar, Juli

Journal:

Papéis Avulsos de Zoologia (São Paulo)

Year:

2003

Language:

english

File:

PDF, 2.23 MB

english, 2003

23

Taxonomy and biodiversity inventories: time to deliver

Fredrik Ronquist, Ulf Gärdenfors

Journal:

Trends in Ecology & Evolution

Year:

2003

Language:

english

File:

PDF, 60 KB

english, 2003

24

Efficiency of Markov Chain Monte Carlo Tree Proposals in Bayesian Phylogenetics

Clemens Lakner, Paul van der Mark, John P. Huelsenbeck, Bret Larget and Fredrik Ronquist

Journal:

Systematic Biology

Year:

2008

Language:

english

File:

PDF, 2.99 MB

english, 2008

25

From Inquilines to Gall Inducers: Genomic Signature of a Life-style Transition in Synergus Gall Wasps

Gobbo, Erik, Lartillot, Nicolas, Hearn, Jack, Stone, Graham N, Abe, Yoshihisa, Wheat, Christopher W, Ide, Tatsuya, Ronquist, Fredrik, Enard, David

Journal:

Genome Biology and Evolution

Year:

2020

File:

PDF, 1.49 MB

2020

26

Phylogeny of Polygonia, Nymphalis and related butterflies (Lepidoptera: Nymphalidae): a total-evidence analysis

SÖREN NYLIN, KLAS NYBLOM, FREDRIK RONQUIST, NIKLAS JANZ, JOSEPH BELICEK, MARI KÄLLERSJÖ

Journal:

Zoological Journal of the Linnean Society

Year:

2001

Language:

english

File:

PDF, 2.14 MB

english, 2001

27

Fast Fitch-Parsimony Algorithms for Large Data Sets

Fredrik Ronquist

Journal:

Year:

1998

Language:

english

File:

PDF, 315 KB

english, 1998

28

Phylogenetic Approaches in Ecology

Hans-Erik Wanntorp, Daniel R. Brooks, Thomas Nilsson, Sören Nylin, Fredrik Ronquist, Stephen C. Stearns and Nina Wedell

Journal:

Year:

1990

Language:

english

File:

PDF, 1.92 MB

english, 1990

29

Molecular phylogenetics for dummies—Review of “Phylogenetic trees made easy: a how-to manual for molecular biologists” by Barry G. Hall

Fredrik Ronquist

Journal:

Molecular Phylogenetics and Evolution

Year:

2003

Language:

english

File:

PDF, 63 KB

english, 2003

30

Quasimodoana, a new Holarctic genus of eucoiline wasps (Hymenoptera, Cynipoidea, Figitidae), with a phylogenetic analysis of related genera

MATTIAS FORSHAGE, GÖRAN NORDLANDER, FREDRIK RONQUIST

Journal:

Systematic Entomology

Year:

2008

Language:

english

File:

PDF, 1.17 MB

english, 2008

31

Evolution of Parasitism among Closely Related Species: Phylogenetic Relationships and the Origin of Inquilinism in Gall Wasps (Hymenoptera, Cynipidae)

Fredrik Ronquist

Journal:

Year:

1994

Language:

english

File:

PDF, 2.40 MB

english, 1994

32

Scuttling towards monophyly: phylogeny of the megaâdiverse genus Megaselia (Diptera: Phoridae)

Hartop, Emily, HÃ¤ggqvist, Sibylle, Ulefors, Sven Olof, Ronquist, Fredrik

Journal:

Systematic Entomology

Year:

2020

File:

PDF, 2.56 MB

2020

33

Patterns of animal dispersal, vicariance and diversification in the Holarctic

ISABEL SANMARTÍN, HENRIK ENGHOFF, FREDRIK RONQUIST

Journal:

Biological Journal of the Linnean Society

Year:

2001

Language:

english

File:

PDF, 3.88 MB

english, 2001

34

Redescription of Acanthaegilips Ashmead, 1897, with characterization of the Anacharitinae and Aspiceratinae (Hymenoptera: Cynipoidea: Figitidae)

PALMIRA ROS-FARRÉ, FREDRIK RONQUIST, JULI PUJADE-VILLAR

Journal:

Zoological Journal of the Linnean Society

Year:

2000

Language:

english

File:

PDF, 517 KB

english, 2000

35

Ancestral Areas and Parsimony

Ronquist, Fredrik

Journal:

Systematic Biology

Year:

1994

Language:

english

File:

PDF, 897 KB

english, 1994

36

Dispersal-Vicariance Analysis: A New Approach to the Quantification of Historical Biogeography

Fredrik Ronquist

Journal:

Systematic Biology

Year:

1997

Language:

english

File:

PDF, 1.13 MB

english, 1997

37

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist, Maxim Teslenko, Paul van der Mark, Daniel L. Ayres, Aaron Darling, Sebastian Höhna, Bret Larget, Liang Liu, Marc A. Suchard and John P. Huelsenbeck

Journal:

Systematic Biology

Year:

2012

Language:

english

File:

PDF, 809 KB

english, 2012

38

EVOLUTION OF THE GALL WASP-HOST PLANT ASSOCIATION

Fredrik Ronquist, Johan Liljeblad

Journal:

Year:

2001

Language:

english

File:

PDF, 412 KB

english, 2001

39

Phylogeny and historical biogeography of the cynipoid wasp family Ibaliidae (Hymenoptera)

GÖRAN NORDLANDER, ZHIWEI LIU, FREDRIK RONQUIST

Journal:

Systematic Entomology

Year:

1996

Language:

english

File:

PDF, 566 KB

english, 1996

40

Potential Applications and Pitfalls of Bayesian Inference of Phylogeny

Miller, Richard E., Ronquist, Fredrik, Huelsenbeck, John P., Larget, Bret

Journal:

Systematic Biology

Year:

2002

Language:

english

File:

PDF, 226 KB

english, 2002

41

“Forms” of water mites (Acari: Hydrachnidia): intraspecific variation or valid species?

Stålstedt, Jeanette, Bergsten, Johannes, Ronquist, Fredrik

Journal:

Ecology and Evolution

Year:

2013

Language:

english

File:

PDF, 1.41 MB

english, 2013

42

EVOLUTION OF THE GALL WASP–HOST PLANT ASSOCIATION

Ronquist, Fredrik, Liljeblad, Johan

Journal:

Year:

2001

Language:

english

File:

PDF, 419 KB

english, 2001

43

A Bayesian Perspective on a Non-parsimonious Parsimony Model

Huelsenbeck, John, Ane, Cecile, Larget, Bret, Ronquist, Fredrik

Journal:

Systematic Biology

Year:

2008

Language:

english

File:

PDF, 3.49 MB

english, 2008

44

Matrix Representation of Trees, Redundancy, and Weighting

Fredrik Ronquist

Journal:

Systematic Biology

Year:

1996

Language:

english

File:

PDF, 724 KB

english, 1996

45

Potential Applications and Pitfalls of Bayesian Inference of Phylogeny

John P. Huelsenbeck, Bret Larget, Richard E. Miller and Fredrik Ronquist

Journal:

Systematic Biology

Year:

2002

Language:

english

File:

PDF, 740 KB

english, 2002

46

Patterns of animal dispersal, vicariance and diversification in the Holarctic

ISABEL SANMARTÍN, HENRIK ENGHOFF, FREDRIK RONQUIST

Journal:

Biological Journal of the Linnean Society

Year:

2001

Language:

english

File:

PDF, 1.52 MB

english, 2001

47

Revision of the Western Palearctic Meteorini (Hymenoptera, Braconidae), with a molecular characterization of hidden Fennoscandian species diversity

STIGENBERG, JULIA, RONQUIST, FREDRIK

Journal:

Year:

2011

Language:

english

File:

PDF, 17.64 MB

english, 2011

48

Three-Dimensional Cost-Matrix Optimization and Maximum Cospeciation

Fredrik Ronquist

Journal:

Year:

1998

Language:

english

File:

PDF, 68 KB

english, 1998

49

Comparative morphology of terminal-instar larvae of Cynipoidea: phylogenetic implications

José Luis Nieves-Aldrey, Hege Vårdal, Fredrik Ronquist

Journal:

Zoologica Scripta

Year:

2005

Language:

english

File:

PDF, 771 KB

english, 2005

50

Process and Pattern in the Evolution of Species Associations

Fredrik Ronquist and Soren Nylin

Journal:

Systematic Zoology

Year:

1990

Language:

english

File:

PDF, 1.85 MB

english, 1990

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